<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
          "DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
  <title>Identifier Index</title>
  <link rel="stylesheet" href="epydoc.css" type="text/css" />
  <script type="text/javascript" src="epydoc.js"></script>
</head>

<body bgcolor="white" text="black" link="blue" vlink="#204080"
      alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">
  <!-- Home link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="trunk.BIP-module.html">Home</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th bgcolor="#70b0f0" class="navbar-select"
          >&nbsp;&nbsp;&nbsp;Indices&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Project homepage -->
      <th class="navbar" align="right" width="100%">
        <table border="0" cellpadding="0" cellspacing="0">
          <tr><th class="navbar" align="center"
            ><a class="navbar" target="_top" href="http://code.google.com/p/bayesian-inference">Project Homepage</a></th>
          </tr></table></th>
  </tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
  <tr valign="top">
    <td width="100%">&nbsp;</td>
    <td>
      <table cellpadding="0" cellspacing="0">
        <!-- hide/show private -->
        <tr><td align="right"><span class="options">[<a href="javascript:void(0);" class="privatelink"
    onclick="toggle_private();">hide&nbsp;private</a>]</span></td></tr>
      </table>
    </td>
  </tr>
</table>
<table border="0" width="100%">
<tr valign="bottom"><td>
<h1 class="epydoc">Identifier Index</h1>
</td><td>
[
 <a href="#A">A</a>
 <a href="#B">B</a>
 <a href="#C">C</a>
 <a href="#D">D</a>
 <a href="#E">E</a>
 <a href="#F">F</a>
 <a href="#G">G</a>
 <a href="#H">H</a>
 <a href="#I">I</a>
  J
  K
 <a href="#L">L</a>
 <a href="#M">M</a>
 <a href="#N">N</a>
 <a href="#O">O</a>
 <a href="#P">P</a>
  Q
 <a href="#R">R</a>
 <a href="#S">S</a>
 <a href="#T">T</a>
 <a href="#U">U</a>
 <a href="#V">V</a>
 <a href="#W">W</a>
  X
  Y
  Z
 <a href="#_">_</a>
]
</td></table>
<table border="0" width="100%">
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="A">A</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#abcRun">abcRun()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#add_salt">add_salt()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.ascii-module.html">ascii</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz-module.html">trunk.BIP.Viz</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#add_data">add_data()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#AIC_from_RSS">AIC_from_RSS()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.asciihist-module.html">asciihist</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz-module.html">trunk.BIP.Viz</a>)</span></td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="B">B</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#basicfit">basicfit()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Bernoulli">Bernoulli()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Binomial">Binomial()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes-module.html">Bayes</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#best_prop_index">best_prop_index()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP-module.html">BIP</a><br />
<span class="index-where">(in&nbsp;trunk)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables-module.html#BayesVar">BayesVar()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables-module.html">trunk.BIP.Bayes.general.bvariables</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Beta">Beta()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables-module.html">bvariables</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general-module.html">trunk.BIP.Bayes.general</a>)</span></td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="C">C</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Condensation-class.html#calculateBaseWeights">calculateBaseWeights()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Condensation-class.html">Condensation</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html#clearFig">clearFig()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Condensation-class.html">Condensation</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation-module.html">trunk.BIP.SMC.condensation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Categor">Categor()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#clearNaN">clearNaN()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables-module.html#continuous_conjugate_priors">continuous_conjugate_priors</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables-module.html">trunk.BIP.Bayes.general.bvariables</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP-module.html#ch">ch</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html#close_plot">close_plot()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#ct">ct</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.logsetup-module.html#ch">ch</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.logsetup-module.html">trunk.BIP.logsetup</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#CM">CM</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#current_plot">current_plot()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#check_constraints">check_constraints()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation-module.html">condensation</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC-module.html">trunk.BIP.SMC</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="D">D</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#delayed_rejection">delayed_rejection()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables-module.html#discrete_conjugate_priors">discrete_conjugate_priors</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables-module.html">trunk.BIP.Bayes.general.bvariables</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#do_inference">do_inference()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#DIC">DIC()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie-module.html#dispatch">dispatch()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC-module.html">trunk.BIP.Bayes.Samplers.MCMC</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#dimensions">dimensions()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Model-class.html#display">display()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#dtplot">dtplot</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="E">E</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#e">e</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation-module.html#evaluate_gaussian">evaluate_gaussian()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation-module.html">trunk.BIP.SMC.condensation</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html">example</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE-module.html">trunk.BIP.SDE</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#enumRun">enumRun()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Model-class.html#evaluateObservationDensity">evaluateObservationDensity()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="F">F</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#f1">f1()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#f5">f5()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#find_best_tau">find_best_tau()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#f2">f2()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP-module.html#fh">fh</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#f3">f3()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.logsetup-module.html#fh">fh</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.logsetup-module.html">trunk.BIP.logsetup</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP-module.html#formatter">formatter</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#f4">f4()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#filtM">filtM()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.logsetup-module.html#formatter">formatter</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.logsetup-module.html">trunk.BIP.logsetup</a>)</span></td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="G">G</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Gamma">Gamma()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_prior_sample">get_prior_sample()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.GlobalData-class.html">GlobalData</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation-module.html">trunk.BIP.SMC.condensation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general-module.html">general</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes-module.html">trunk.BIP.Bayes</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#getPosteriors">getPosteriors()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#gr_convergence">gr_convergence()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_posterior_sample">get_posterior_sample()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie.Model-class.html#getStats">getStats()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#gr_R">gr_R()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_prior_dist">get_prior_dist()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie-module.html">gillespie</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE-module.html">trunk.BIP.SDE</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie.Model-class.html#GSSA">GSSA()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie.Model-class.html">Model</a>)</span></td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="H">H</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.ascii.Histogram-class.html">Histogram</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.ascii-module.html">trunk.BIP.Viz.ascii</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.ascii.Histogram-class.html#horizontal">horizontal()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.ascii.Histogram-class.html">Histogram</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.asciihist.Histogram-class.html">Histogram</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.asciihist-module.html">trunk.BIP.Viz.asciihist</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.asciihist.Histogram-class.html#horizontal">horizontal()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.asciihist.Histogram-class.html">Histogram</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="I">I</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#imp_sample">imp_sample()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Model-class.html#iterate">iterate()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#ini">ini</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.IterationData-class.html">IterationData</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation-module.html">trunk.BIP.SMC.condensation</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="L">L</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.lhs-module.html">lhs</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes-module.html">trunk.BIP.Bayes</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html">like</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes-module.html">trunk.BIP.Bayes</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.logsetup-module.html#logger">logger</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.logsetup-module.html">trunk.BIP.logsetup</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.lhs-module.html#lhs">lhs()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.lhs-module.html">trunk.BIP.Bayes.lhs</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#liklist">liklist</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Lognormal">Lognormal()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.lhs-module.html#lhsFromDensity">lhsFromDensity()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.lhs-module.html">trunk.BIP.Bayes.lhs</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC-module.html#logger">logger</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC-module.html">trunk.BIP.Bayes.Samplers.MCMC</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#logPooling">logPooling()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.lhs-module.html#lhsFromSample">lhsFromSample()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.lhs-module.html">trunk.BIP.Bayes.lhs</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP-module.html#logger">logger</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.logsetup-module.html">logsetup</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="M">M</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#M">M</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Model-class.html">Model</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation-module.html">trunk.BIP.SMC.condensation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie-module.html#main">main()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html">Melding</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes-module.html">trunk.BIP.Bayes</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#model">model()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#main2">main2()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html">Metropolis</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC-module.html">trunk.BIP.Bayes.Samplers.MCMC</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#model_as_ra">model_as_ra()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC-module.html">MCMC</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers-module.html">trunk.BIP.Bayes.Samplers</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#mh_test">mh_test()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC-module.html#model_as_ra">model_as_ra()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC-module.html">trunk.BIP.Bayes.Samplers.MCMC</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#mcmc_run">mcmc_run()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie.Model-class.html">Model</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="N">N</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Negbin">Negbin()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Normal">Normal()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr><td class="link-index">&nbsp;</td><td class="link-index">&nbsp;</td><td class="link-index">&nbsp;</td></tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="O">O</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Model-class.html#obtainObservations">obtainObservations()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#optimize">optimize()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr><td class="link-index">&nbsp;</td><td class="link-index">&nbsp;</td><td class="link-index">&nbsp;</td></tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="P">P</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie-module.html#p1">p1()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html#plot_series">plot_series()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie-module.html#port">port</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie-module.html#p2">p2()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html#plot_series2">plot_series2()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html#pred_new_cases">pred_new_cases()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html#peakdet">peakdet()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html#plothist">plothist()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Condensation-class.html#predictNewBases">predictNewBases()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Condensation-class.html">Condensation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#phiplot">phiplot</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html#plotlines">plotlines()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Model-class.html#predictSamplePosition">predictSamplePosition()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Model-class.html">Model</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Condensation-class.html#pickBaseSample">pickBaseSample()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Condensation-class.html">Condensation</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTpyplot-class.html#plotlines">plotlines()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTpyplot-class.html">RTpyplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#prior_sample">prior_sample()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html#plot_par_series">plot_par_series()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html">PlotMeld</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes-module.html">trunk.BIP.Bayes</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#propf">propf</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html#plot_par_violin">plot_par_violin()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#plotRaHist">plotRaHist()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#pt">pt</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html#plot_pred">plot_pred()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#po">po()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#plot_results">plot_results()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Poisson">Poisson()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="R">R</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#r">r</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime-module.html">trunk.BIP.Viz.realtime</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie.Model-class.html#run">run()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie.Model-class.html">Model</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.lhs-module.html#rank_restr">rank_restr()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.lhs-module.html">trunk.BIP.Bayes.lhs</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTpyplot-class.html">RTpyplot</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime-module.html">trunk.BIP.Viz.realtime</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Condensation-class.html#runFilter">runFilter()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Condensation-class.html">Condensation</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime-module.html">realtime</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz-module.html">trunk.BIP.Viz</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#run">run()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#runModel">runModel()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime-module.html#rpc_plot">rpc_plot()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime-module.html">trunk.BIP.Viz.realtime</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#run">run()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="S">S</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers-module.html">Samplers</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes-module.html">trunk.BIP.Bayes</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#setPhiFromData">setPhiFromData()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Simple">Simple()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html#scatter">scatter()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#setTheta">setTheta()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#sir">sir()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE-module.html">SDE</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#setThetaFromData">setThetaFromData()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC-module.html">SMC</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#seqhist">seqhist</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#setup_xmlrpc_plotserver">setup_xmlrpc_plotserver()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime-module.html#start_server">start_server()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime-module.html">trunk.BIP.Viz.realtime</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie-module.html#server">server</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Model-class.html#setupPriorConditions">setupPriorConditions()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#step">step()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#set_priors">set_priors()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#shut_down">shut_down()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#step">step()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html">Metropolis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#setPhi">setPhi()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#shutdown_xmlrpc_plotserver">shutdown_xmlrpc_plotserver()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="T">T</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#t0">t0</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC-module.html#timeit">timeit()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC-module.html">trunk.BIP.Bayes.Samplers.MCMC</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#trace_convergence">trace_convergence</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#term_pool">term_pool()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#tmat">tmat</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#thplot">thplot</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#trace_acceptance">trace_acceptance</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="U">U</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Uniform">Uniform()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#update_CR_dist">update_CR_dist()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Condensation-class.html#updateAfterIterating">updateAfterIterating()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Condensation-class.html">Condensation</a>)</span></td>
</tr>
<tr><td class="link-index">&nbsp;</td><td class="link-index">&nbsp;</td><td class="link-index">&nbsp;</td></tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="V">V</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.__version__-module.html#version">version</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.__version__-module.html">trunk.BIP.__version__</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.PlotMeld-module.html#violin_plot">violin_plot()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.PlotMeld-module.html">trunk.BIP.Bayes.PlotMeld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz-module.html">Viz</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.ascii.Histogram-class.html#vertical">vertical()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.ascii.Histogram-class.html">Histogram</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding-module.html#Viz">Viz</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding-module.html">trunk.BIP.Bayes.Melding</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.example-module.html#vnames">vnames</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.example-module.html">trunk.BIP.SDE.example</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.asciihist.Histogram-class.html#vertical">vertical()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.asciihist.Histogram-class.html">Histogram</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie-module.html#viz">viz</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie-module.html">trunk.BIP.SDE.gillespie</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="W">W</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.like-module.html#Weibull">Weibull()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.like-module.html">trunk.BIP.Bayes.like</a>)</span></td>
<td width="33%" class="link-index">&nbsp;</td>
<td width="33%" class="link-index">&nbsp;</td>
</tr>
<tr><td class="link-index">&nbsp;</td><td class="link-index">&nbsp;</td><td class="link-index">&nbsp;</td></tr>
</table>
</td></tr>
<tr valign="top"><td valign="top" width="1%"><h2 class="epydoc"><a name="_">_</a></h2></td>
<td valign="top">
<table class="link-index" width="100%" border="1">
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables.__BayesC-class.html">__BayesC</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables-module.html">trunk.BIP.Bayes.general.bvariables</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime-module.html#__ports_used">__ports_used</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime-module.html">trunk.BIP.Viz.realtime</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_long_term_prediction_plot">_long_term_prediction_plot()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables.__BayesD-class.html">__BayesD</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables-module.html">trunk.BIP.Bayes.general.bvariables</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#__str__">__str__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_monitor_plot">_monitor_plot()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.__version__-module.html">__version__</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP-module.html">trunk.BIP</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_monitor_setup">_monitor_setup()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_accept">_accept()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.Meld-class.html#_output_loglike">_output_loglike()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.Meld-class.html">Meld</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_add_salt">_add_salt()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html">Metropolis</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_plot_MAP">_plot_MAP()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html">Metropolis</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#_alpha1">_alpha1()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_po">_po</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html">_BayesVar</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables-module.html">trunk.BIP.Bayes.general.bvariables</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_post_from_conjugate">_post_from_conjugate()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#_chain_evolution">_chain_evolution()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#_prop_initial_theta">_prop_initial_theta()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables.__BayesC-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables.__BayesC-class.html" onclick="show_private();">__BayesC</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#_det_outlier_chains">_det_outlier_chains()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#_prop_phi">_prop_phi()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables.__BayesD-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables.__BayesD-class.html" onclick="show_private();">__BayesD</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_dimensions">_dimensions</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_propose">_propose()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html">Metropolis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SDE.gillespie.Model-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SDE.gillespie.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_every_plot">_every_plot()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_propose">_propose()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Condensation-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Condensation-class.html">Condensation</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_flavorize">_flavorize()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_R">_R</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.GlobalData-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.GlobalData-class.html">GlobalData</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_format_db_tables">_format_db_tables()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_read_results">_read_results()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.IterationData-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.IterationData-class.html">IterationData</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_get95_bands">_get95_bands()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_rms_error">_rms_error()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.SMC.condensation.Model-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.SMC.condensation.Model-class.html">Model</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#_get_post_prob">_get_post_prob()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html">Dream</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_rms_fit">_rms_fit()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html">Metropolis</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.ascii.Histogram-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.ascii.Histogram-class.html">Histogram</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html#_histFromRA">_histFromRA()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html">_Sampler</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC-module.html">trunk.BIP.Bayes.Samplers.MCMC</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.asciihist.Histogram-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.asciihist.Histogram-class.html">Histogram</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_imp_sample">_imp_sample()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html">Metropolis</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_save_to_db">_save_to_db()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Melding.FitModel-class.html#_init_priors">_init_priors()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Melding.FitModel-class.html">FitModel</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTpyplot-class.html#_setup">_setup()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTpyplot-class.html">RTpyplot</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTpyplot-class.html#__init__">__init__()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTpyplot-class.html">RTpyplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_j">_j</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_tune_likvar">_tune_likvar()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.ascii-module.html#__licence__">__licence__</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.ascii-module.html">trunk.BIP.Viz.ascii</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_likelihood">_likelihood()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_update">_update()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.general.bvariables._BayesVar-class.html" onclick="show_private();">_BayesVar</a>)</span></td>
</tr>
<tr>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.asciihist-module.html#__licence__">__licence__</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.asciihist-module.html">trunk.BIP.Viz.asciihist</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Viz.realtime.RTplot-class.html#_linesFromRA">_linesFromRA()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Viz.realtime.RTplot-class.html">RTplot</a>)</span></td>
<td width="33%" class="link-index"><a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_watch_chain">_watch_chain()</a><br />
<span class="index-where">(in&nbsp;<a href="trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html" onclick="show_private();">_Sampler</a>)</span></td>
</tr>
</table>
</td></tr>
</table>
<br /><br /><!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">
  <!-- Home link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="trunk.BIP-module.html">Home</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th bgcolor="#70b0f0" class="navbar-select"
          >&nbsp;&nbsp;&nbsp;Indices&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Project homepage -->
      <th class="navbar" align="right" width="100%">
        <table border="0" cellpadding="0" cellspacing="0">
          <tr><th class="navbar" align="center"
            ><a class="navbar" target="_top" href="http://code.google.com/p/bayesian-inference">Project Homepage</a></th>
          </tr></table></th>
  </tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
  <tr>
    <td align="left" class="footer">
    Generated by Epydoc 3.0.1 on Wed Jan 26 15:29:58 2011
    </td>
    <td align="right" class="footer">
      <a target="mainFrame" href="http://epydoc.sourceforge.net"
        >http://epydoc.sourceforge.net</a>
    </td>
  </tr>
</table>

<script type="text/javascript">
  <!--
  // Private objects are initially displayed (because if
  // javascript is turned off then we want them to be
  // visible); but by default, we want to hide them.  So hide
  // them unless we have a cookie that says to show them.
  checkCookie();
  // -->
</script>
</body>
</html>
